8BJH
chimera of the inactive ExoY Nucleotidyl Cyclase domain from Vibrio nigripulchritudo MARTX toxin, with the double mutation K3528M and K3535I, fused to a proline-Rich-Domain (PRD) and profilin, bound to Latrunculin B-ADP-Mg-actin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-06-12 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9793 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 81.739, 62.825, 93.581 |
Unit cell angles | 90.00, 91.03, 90.00 |
Refinement procedure
Resolution | 93.570 - 1.690 |
R-factor | 0.1799 |
Rwork | 0.178 |
R-free | 0.21180 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2pav |
RMSD bond length | 0.008 |
RMSD bond angle | 0.920 |
Data reduction software | XDS (Version Feb 5, 2021) |
Data scaling software | Aimless (Version 0.7.4) |
Phasing software | PHASER (Version 2.8.3) |
Refinement software | BUSTER (2.10.3 (20-MAY-2020)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 93.570 | 1.850 |
High resolution limit [Å] | 1.690 | 1.690 |
Rmerge | 0.081 | 0.910 |
Number of reflections | 81375 | 1539 |
<I/σ(I)> | 11.2 | 1.7 |
Completeness [%] | 94.9 | 60.1 |
Redundancy | 6.9 | 6.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | 30% PEG4000 0.2M LISO4 0.1M TRIS PH8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K |