8BDI
VCB in complex with compound 32
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-08-23 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9997 |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 92.733, 92.733, 364.235 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 91.060 - 2.108 |
R-factor | 0.2114 |
Rwork | 0.208 |
R-free | 0.26950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5nw1 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.950 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.X) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 364.235 | 2.272 |
High resolution limit [Å] | 2.108 | 2.108 |
Rmerge | 0.092 | 1.677 |
Rmeas | 0.096 | 1.749 |
Rpim | 0.026 | 0.494 |
Total number of observations | 998971 | |
Number of reflections | 76137 | 3809 |
<I/σ(I)> | 17.4 | |
Completeness [%] | 95.2 | 66.8 |
Redundancy | 13.1 | 12.3 |
CC(1/2) | 0.999 | 0.622 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 10-20% PEG 8000, 0.2 M magnesium acetate and 0.1 M sodium cacodylate pH 6.5, 1mM compound soak |