Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8B7E

The crystal structure of N828V variant of DNA Pol Epsilon containing UTP in the polymerase active site

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE MASSIF-3
Synchrotron siteESRF
BeamlineMASSIF-3
Temperature [K]100
Detector technologyPIXEL
Collection date2018-09-03
DetectorDECTRIS EIGER X 4M
Wavelength(s)0.96770
Spacegroup nameP 1 2 1
Unit cell lengths154.360, 69.990, 158.320
Unit cell angles90.00, 112.55, 90.00
Refinement procedure
Resolution26.750 - 2.600
R-factor0.1995
Rwork0.198
R-free0.23010
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4m8o
Data reduction softwareMOSFLM
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]78.39078.3902.640
High resolution limit [Å]2.60014.2402.600
Rmerge0.1660.0441.245
Rmeas0.1890.0531.406
Rpim0.0890.0290.643
Total number of observations405993223820717
Number of reflections955226424681
<I/σ(I)>6.813.31.4
Completeness [%]98.998.299.9
Redundancy4.33.54.4
CC(1/2)0.9940.9860.323
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP829210mM Tris, 15% PEG8K,10mM CaCl2

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon