8B7D
Luminal domain of TMEM106B
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-08-07 |
Detector | DECTRIS EIGER2 X CdTe 9M |
Wavelength(s) | 1.00 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 52.408, 52.408, 132.922 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.760 - 2.590 |
R-factor | 0.2349 |
Rwork | 0.234 |
R-free | 0.24260 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | alpha fold model Q8N353 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.606 |
Data reduction software | DIALS |
Data scaling software | DIALS |
Phasing software | PHASER |
Refinement software | PHENIX (dev_4682) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.760 | 2.640 |
High resolution limit [Å] | 2.590 | 2.590 |
Rmerge | 0.187 | 3.804 |
Rpim | 0.038 | 0.756 |
Number of reflections | 6291 | 301 |
<I/σ(I)> | 13.5 | |
Completeness [%] | 100.0 | 100 |
Redundancy | 25 | 25.8 |
CC(1/2) | 0.371 | 0.371 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 2.0 M NaCl, 0.1 M BisTris-HCl, pH 5.5 |