8B07
Crystal structure of monkeypox virus methyltransferase VP39 in complex with sinefungin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-09-02 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 51.891, 84.427, 153.755 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.170 - 2.050 |
R-factor | 0.2096 |
Rwork | 0.208 |
R-free | 0.23270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1vp3 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.519 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20_4459) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.170 | 2.125 |
High resolution limit [Å] | 2.050 | 2.050 |
Rmerge | 0.273 | 2.276 |
Rmeas | 0.284 | 2.366 |
Rpim | 0.078 | 0.640 |
Number of reflections | 43138 | 4205 |
<I/σ(I)> | 9.82 | 1.1 |
Completeness [%] | 99.8 | 98.52 |
Redundancy | 13.1 | 13.4 |
CC(1/2) | 0.996 | 0.448 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 200 mM lithium citrate, 14.5% (w/v) PEG 3350 |