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8AE5

Crystal structure of human legumain in complex with macrocypin 1a

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE MASSIF-3
Synchrotron siteESRF
BeamlineMASSIF-3
Temperature [K]100
Detector technologyPIXEL
Collection date2017-12-12
DetectorDECTRIS EIGER X 4M
Wavelength(s)0.9677
Spacegroup nameC 2 2 21
Unit cell lengths159.178, 174.122, 112.998
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.390 - 2.290
R-factor0.223
Rwork0.221
R-free0.25780
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7o50
RMSD bond length0.009
RMSD bond angle1.082
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHENIX
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]47.39047.3902.420
High resolution limit [Å]2.2806.7902.280
Rmerge0.1090.0403.394
Rmeas0.1140.0423.552
Total number of observations803083
Number of reflections70688288510813
<I/σ(I)>13.7251.070.6
Completeness [%]99.199.394.7
Redundancy11.36110.55711.417
CC(1/2)0.9990.9990.387
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2771.6 M Ammonium Sulfate, 500 mM LiCl

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