8AE5
Crystal structure of human legumain in complex with macrocypin 1a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-12 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.9677 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 159.178, 174.122, 112.998 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.390 - 2.290 |
R-factor | 0.223 |
Rwork | 0.221 |
R-free | 0.25780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7o50 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.082 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.390 | 47.390 | 2.420 |
High resolution limit [Å] | 2.280 | 6.790 | 2.280 |
Rmerge | 0.109 | 0.040 | 3.394 |
Rmeas | 0.114 | 0.042 | 3.552 |
Total number of observations | 803083 | ||
Number of reflections | 70688 | 2885 | 10813 |
<I/σ(I)> | 13.72 | 51.07 | 0.6 |
Completeness [%] | 99.1 | 99.3 | 94.7 |
Redundancy | 11.361 | 10.557 | 11.417 |
CC(1/2) | 0.999 | 0.999 | 0.387 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 1.6 M Ammonium Sulfate, 500 mM LiCl |