8AAI
Crystal structure of the PDZ tandem of syntenin in complex with fragment E5
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ESRF BEAMLINE ID23-1 |
| Synchrotron site | ESRF |
| Beamline | ID23-1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2017-11-19 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.97625 |
| Spacegroup name | P 1 |
| Unit cell lengths | 29.114, 56.130, 102.867 |
| Unit cell angles | 82.71, 83.46, 77.03 |
Refinement procedure
| Resolution | 27.630 - 2.760 |
| Rwork | 0.275 |
| R-free | 0.31710 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 1n99 |
| RMSD bond length | 0.003 |
| RMSD bond angle | 0.737 |
| Data reduction software | xia2 (XIA2 0.5.337-g4c821dce-dials-1.6) |
| Data scaling software | DIALS (DIALS 1.6.3-g2108d754-release) |
| Phasing software | PHASER (2.8.3) |
| Refinement software | REFMAC (5.8.0350) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 27.630 | 2.859 |
| High resolution limit [Å] | 2.760 | 2.760 |
| Rmerge | 0.139 | 0.442 |
| Rpim | 0.089 | 0.288 |
| Number of reflections | 15909 | 1613 |
| <I/σ(I)> | 5.27 | 2.26 |
| Completeness [%] | 97.3 | 96.74 |
| Redundancy | 5.27 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 297 | 100mM Sodium Acetate 200mM Ammonium acetate 20% PEG 3350 |
