8A4K
Human GDAP1, R282H mutant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, DESY BEAMLINE P11 |
Synchrotron site | PETRA III, DESY |
Beamline | P11 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-27 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.03319 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 73.279, 113.370, 115.194 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.840 - 1.950 |
R-factor | 0.2254 |
Rwork | 0.225 |
R-free | 0.25100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7alm |
RMSD bond length | 0.014 |
RMSD bond angle | 1.371 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.20_4459) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.070 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.049 | 2.738 |
Rmeas | 0.053 | 2.969 |
Number of reflections | 70450 | 11256 |
<I/σ(I)> | 15.4 | 0.7 |
Completeness [%] | 99.8 | 99.9 |
Redundancy | 6.7 | |
CC(1/2) | 0.999 | 0.416 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.1 M succinic acid; 20% (w/v) PEG 3350 |