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8A49

Endoglycosidase S in complex with IgG1 Fc

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2022-05-28
DetectorDECTRIS EIGER2 XE 16M
Wavelength(s)0.9763
Spacegroup nameP 21 21 21
Unit cell lengths96.529, 174.294, 193.059
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.780 - 3.450
Rwork0.253
R-free0.31120
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6en3
RMSD bond length0.002
RMSD bond angle0.604
Data reduction softwareDIALS
Data scaling softwareDIALS
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0352)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.7803.510
High resolution limit [Å]3.4503.450
Rmerge0.1441.951
Rmeas0.1502.023
Rpim0.0400.532
Number of reflections436782124
<I/σ(I)>11.20.6
Completeness [%]100.0100
Redundancy13.714.3
CC(1/2)1.0000.599
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5294.150.09 M halogens (0.3M Sodium fluoride; 0.3M Sodium bromide; 0.3M Sodium iodide), 0.1 M buffer system 2 (Sodium HEPES; MOPS (acid)), pH 7.5, 37.5 % v/v precipitant mix 4 (25% v/v MPD; 25% PEG 1000; 25% w/v PEG 3350) - condition B8 from Morpheus crystallisation screen (Molecular Dimensions)

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PDB entries from 2024-06-05

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