Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8A1Q

HIV-1 Integrase Catalytic Core Domain and C-Terminal Domain in Complex with Allosteric Integrase Inhibitor STP0404 (Pirmitegravir)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2021-12-14
DetectorDECTRIS EIGER2 XE 16M
Wavelength(s)0.9795
Spacegroup nameP 1 21 1
Unit cell lengths62.262, 69.258, 64.106
Unit cell angles90.00, 102.38, 90.00
Refinement procedure
Resolution62.610 - 2.060
R-factor0.2203
Rwork0.219
R-free0.23480
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6t6e 2b4j
RMSD bond length0.002
RMSD bond angle0.459
Data reduction softwareDIALS
Data scaling softwareDIALS
Phasing softwarePHASER
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]69.26069.3002.100
High resolution limit [Å]2.0605.5902.060
Rmeas0.1700.0684.606
Rpim0.0250.0100.726
Number of reflections3308617251647
<I/σ(I)>19.4106.90.4
Completeness [%]100.0100100
Redundancy45.99
CC(1/2)1.0001.0000.603
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5294PEG 8000, ethylene glycol, magnesium chloride, calcium chloride, imidazole-MES

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon