8VTC
Crystal structure of Mycobacterium avium dihydrofolate reductase in complex with NADPH and trimethoprim
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-1 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-20 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.97933 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 70.251, 70.251, 73.511 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.564 - 2.000 |
Rwork | 0.167 |
R-free | 0.24030 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.710 |
Data reduction software | autoPROC |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0425) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.564 | 29.550 | 2.050 |
High resolution limit [Å] | 2.000 | 8.940 | 2.000 |
Rmerge | 0.024 | 0.014 | 0.206 |
Rmeas | 0.034 | 0.019 | 0.292 |
Rpim | 0.024 | 0.014 | 0.206 |
Number of reflections | 12872 | 183 | 891 |
<I/σ(I)> | 14 | 30.1 | 2.9 |
Completeness [%] | 99.4 | 97.6 | 96.9 |
Redundancy | 1.8 | 1.5 | 1.9 |
CC(1/2) | 0.999 | 0.999 | 0.921 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 277.15 | 55% MPD, 0.1 M Hepes pH 7.5 and 2 mM DTT |