8VLM
Crystal structure of the yeast cytosine deaminase (yCD) E64V-M100W heterodimer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08B1-1 |
Synchrotron site | CLSI |
Beamline | 08B1-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2024-05-23 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.18049 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.809, 112.090, 116.570 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.360 - 2.670 |
R-factor | 0.1952 |
Rwork | 0.193 |
R-free | 0.24150 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.615 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.600 | 2.800 |
High resolution limit [Å] | 2.670 | 2.670 |
Rmerge | 0.129 | 0.755 |
Rmeas | 0.145 | 0.843 |
Rpim | 0.064 | 0.369 |
Total number of observations | 103453 | 13570 |
Number of reflections | 21119 | 2753 |
<I/σ(I)> | 7.6 | 2 |
Completeness [%] | 100.0 | |
Redundancy | 4.9 | 4.9 |
CC(1/2) | 0.991 | 0.700 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 7 | 295 | 0.1 M HEPES pH 7, 10%(w/v) PEG 4000, 10% (v/v) Isopropanol, cryoprotected by the reservoir solution supplemented with 15% ethylene glycol |