8U32
Crystal structure of PD-1 in complex with a Fab
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-01-27 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9794 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 76.482, 88.881, 235.859 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.960 - 2.510 |
R-factor | 0.1972 |
Rwork | 0.195 |
R-free | 0.23040 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.009 |
RMSD bond angle | 1.222 |
Data reduction software | autoPROC |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18.2-3874_final) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 84.170 | 2.600 |
High resolution limit [Å] | 2.510 | 2.510 |
Rmerge | 0.077 | 0.685 |
Number of reflections | 52262 | 5506 |
<I/σ(I)> | 16.7 | |
Completeness [%] | 93.0 | 99.6 |
Redundancy | 6.7 | |
CC(1/2) | 0.999 | 0.884 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 20 %w/v PEG 3350, 0.2 M Na2 Malon, 0.1 M BIS-TRIS prop pH 8.5 |