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8SVA

Structure of the Rhodococcus sp. USK13 DarR-20 bp DNA complex

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.2
Synchrotron siteALS
Beamline5.0.2
Temperature [K]100
Detector technologyPIXEL
Collection date2021-02-03
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.989
Spacegroup nameP 65
Unit cell lengths128.894, 128.894, 113.929
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution42.190 - 2.960
R-factor0.2424
Rwork0.239
R-free0.27610
Structure solution methodSAD
RMSD bond length0.013
RMSD bond angle0.936
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwareAutoSol
Refinement softwarePHENIX ((1.20.1_4487: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.1903.030
High resolution limit [Å]2.9602.960
Rpim0.0641.575
Number of reflections225231477
<I/σ(I)>8.90.5
Completeness [%]99.7
Redundancy7.3
CC(1/2)0.9980.137
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2780.1 M MES pH 6.5, 30% PEG 8000 and 0.1 M Calcium acetate

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PDB entries from 2024-05-15

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