8SLS
Crystal structure of human STEP (PTPN5) at cryogenic temperature (100 K) and ambient pressure (0.1 MPa)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE 7B2 |
Synchrotron site | CHESS |
Beamline | 7B2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-10-30 |
Detector | DECTRIS EIGER2 S 16M |
Wavelength(s) | 1.033 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 39.666, 63.508, 135.156 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 67.580 - 1.710 |
R-factor | 0.1932 |
Rwork | 0.192 |
R-free | 0.22440 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.013 |
RMSD bond angle | 1.204 |
Data reduction software | DIMPLE (v2.6.1) |
Data scaling software | xia2 (3.5.0) |
Phasing software | DIMPLE (v2.6.1) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 67.580 | 1.772 |
High resolution limit [Å] | 1.710 | 1.711 |
Rmerge | 0.108 | 2.370 |
Rmeas | 0.122 | 2.621 |
Rpim | 0.055 | 1.106 |
Number of reflections | 37552 | 3655 |
<I/σ(I)> | 10.23 | 0.59 |
Completeness [%] | 98.6 | 93.42 |
Redundancy | 4.7 | 4.8 |
CC(1/2) | 0.960 | 0.374 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.65 | 293.15 | 30% PEG 3350, 200 mM Li2SO4, 100 mM bis-tris pH 5.65 |