8RHQ
Crystal structure of HLA-A*11:01 in complex with SVLNDIFSRL, an 10-mer epitope from SARS-CoV-2 Spike (S975-984)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-02-14 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.953732 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 85.492, 85.492, 312.028 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.750 - 2.000 |
R-factor | 0.2004 |
Rwork | 0.198 |
R-free | 0.24430 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.651 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.21rc1_5127) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.720 | 2.030 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.147 | 0.596 |
Rmeas | 0.151 | 0.612 |
Rpim | 0.034 | 0.140 |
Number of reflections | 90742 | 4424 |
<I/σ(I)> | 15.1 | 5.6 |
Completeness [%] | 100.0 | 100 |
Redundancy | 19.8 | 19 |
CC(1/2) | 0.997 | 0.947 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 20% PEG3350, 0.2M Sodium acetate tihydrate pH 7.0 |