8PI5
Crystal structure of human insulin desB30 precursor with an Alanine-Methionine-Lysine C-peptide in hexamer (T3R3) conformation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2013-01-22 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.542 |
Spacegroup name | H 3 |
Unit cell lengths | 79.353, 79.353, 39.185 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 13.660 - 1.660 |
R-factor | 0.1549 |
Rwork | 0.154 |
R-free | 0.17860 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 0.874 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 13.660 | 1.720 |
High resolution limit [Å] | 1.660 | 1.660 |
Rmerge | 0.047 | 0.312 |
Rmeas | 0.051 | 0.375 |
Rpim | 0.020 | 0.203 |
Number of reflections | 10563 | 829 |
<I/σ(I)> | 25.54 | 3.58 |
Completeness [%] | 97.2 | 76.19 |
Redundancy | 6.1 | 2.5 |
CC(1/2) | 0.999 | 0.847 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 9 | 291 | 6 mg/ml protein, 20 mM resorcinol, 0.5 Zn2+ (from zinc acetate) per insuln monomer in water, pH 7.95 precipitant: 0.1 M Bicine, pH 9.0, 2 % (v/v) 1,4-dioxane, 10 % (w/v) PEG 20000 |