Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8OXX

Transglutaminase 3 in complex with inhibitor Z-don and DH patient-derived Fab DH63-B02

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID30B
Synchrotron siteESRF
BeamlineID30B
Temperature [K]100
Detector technologyPIXEL
Collection date2022-10-05
DetectorDECTRIS EIGER2 X 9M
Wavelength(s)0.9184
Spacegroup nameP 1 21 1
Unit cell lengths79.271, 65.005, 90.908
Unit cell angles90.00, 96.85, 90.00
Refinement procedure
Resolution52.804 - 2.500
Rwork0.154
R-free0.22210
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.009
RMSD bond angle1.652
Data reduction softwareXDS (20220110)
Data scaling softwareAimless (0.7.9)
Phasing softwarePHASER (2.8.3)
Refinement softwareREFMAC (5.8.0411)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]52.80452.7502.600
High resolution limit [Å]2.5009.0102.500
Rmerge0.1000.0310.576
Rmeas0.1350.0410.776
Rpim0.0900.0280.516
Number of reflections302347243536
<I/σ(I)>8.9
Completeness [%]94.6
Redundancy3.73.53.9
CC(1/2)0.9940.9980.790
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.12980.1M Hepes-mops pH 7.1, 22% ethylene glycol, 11% PEG8000, 8 mM CaCl2, 8 mM MgCl2

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon