8ONE

Crystal Structure of full-length Human Lysyl Hydroxylase LH3 - Asp190Ser mutant - Cocrystal with Fe2+, Mn2+, UDP-Glucose

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	ESRF BEAMLINE ID23-2
Synchrotron site	ESRF
Beamline	ID23-2
Temperature [K]	100
Detector technology	PIXEL
Collection date	2021-03-16
Detector	DECTRIS PILATUS 2M
Wavelength(s)	0.775
Spacegroup name	C 2 2 21
Unit cell lengths	97.090, 100.181, 223.794
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	47.440 - 2.300
R-factor	0.2052
Rwork	0.204
R-free	0.22800
Structure solution method	MOLECULAR REPLACEMENT
RMSD bond length	0.002
RMSD bond angle	0.477
Data reduction software	XDS
Data scaling software	Aimless
Phasing software	PHASER
Refinement software	PHENIX ((1.20_4459: ???))

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	48.880	2.380
High resolution limit [Å]	2.300	2.300
Rmerge	0.175	1.827
Rpim	0.107	1.255
Number of reflections	48804	4443
<I/σ(I)>	5.7	0.5
Completeness [%]	99.9	99.9
Redundancy	6.6	5.7
CC(1/2)	0.995	0.587

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP		277	600 mM sodium formate, 12% poly-glutamic-acid