8JWU
PHD Finger Protein 7 (PHF7) fused to UBE2D2 via a (GSGG)3 linker
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-22 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.97957 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 210.540, 102.050, 78.640 |
Unit cell angles | 90.00, 95.92, 90.00 |
Refinement procedure
Resolution | 29.890 - 3.580 |
R-factor | 0.2209 |
Rwork | 0.216 |
R-free | 0.26450 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1weq 8jws 6hpr Alphafold |
RMSD bond length | 0.006 |
RMSD bond angle | 0.948 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX (1.19.2_4158) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.890 | 3.708 |
High resolution limit [Å] | 3.580 | 3.580 |
Number of reflections | 19600 | 1918 |
<I/σ(I)> | 11.16 | 2.02 |
Completeness [%] | 99.3 | 99.69 |
Redundancy | 6.9 | 7.3 |
CC(1/2) | 0.998 | 0.819 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | PEG8000, DMSO, MOPS |