8IG1
Crystal structure of wild-type transthyretin in complex with rafoxanide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-17A |
Synchrotron site | Photon Factory |
Beamline | BL-17A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-02-12 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.98 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 42.710, 84.825, 64.326 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.409 - 1.451 |
R-factor | 0.1712 |
Rwork | 0.170 |
R-free | 0.19250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4n85 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.919 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.580 | 1.500 |
High resolution limit [Å] | 1.450 | 1.450 |
Rmeas | 0.053 | 0.772 |
Number of reflections | 41970 | 4042 |
<I/σ(I)> | 19.4 | 2.6 |
Completeness [%] | 99.6 | |
Redundancy | 7.4 | |
CC(1/2) | 0.999 | 0.868 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | Disodium malonate, sodium acetate pH 4.6 |