8HJE
Vismodegib binds to the catalytical domain of human Ubiquitin-Specific Protease 28
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL02U1 |
Synchrotron site | SSRF |
Beamline | BL02U1 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2021-07-02 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.9792 |
Spacegroup name | H 3 2 |
Unit cell lengths | 105.099, 105.099, 327.422 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 43.850 - 2.850 |
R-factor | 0.22372 |
Rwork | 0.222 |
R-free | 0.25429 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.597 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | REFMAC |
Refinement software | REFMAC (1.16) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.850 | 2.953 |
High resolution limit [Å] | 2.850 | 2.851 |
Number of reflections | 16695 | 1629 |
<I/σ(I)> | 20.76 | |
Completeness [%] | 99.6 | |
Redundancy | 2 | |
CC(1/2) | 0.999 | 0.902 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.4 | 291 | 0.1 M Bis-tris propane pH 6.4, 0.2 M potassium thiocyanate, 20% PEG3350 and 3% sucrose |