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8HJE

Vismodegib binds to the catalytical domain of human Ubiquitin-Specific Protease 28

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL02U1
Synchrotron siteSSRF
BeamlineBL02U1
Temperature [K]80
Detector technologyPIXEL
Collection date2021-07-02
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.9792
Spacegroup nameH 3 2
Unit cell lengths105.099, 105.099, 327.422
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution43.850 - 2.850
R-factor0.22372
Rwork0.222
R-free0.25429
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008
RMSD bond angle1.597
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwareREFMAC
Refinement softwareREFMAC (1.16)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]43.8502.953
High resolution limit [Å]2.8502.851
Number of reflections166951629
<I/σ(I)>20.76
Completeness [%]99.6
Redundancy2
CC(1/2)0.9990.902
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.42910.1 M Bis-tris propane pH 6.4, 0.2 M potassium thiocyanate, 20% PEG3350 and 3% sucrose

219869

PDB entries from 2024-05-15

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