8GKR
Crystal structure of human DNA polymerase eta incorporating 5F-dUTP across dA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 273 |
Detector technology | PIXEL |
Collection date | 2023-02-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97934 |
Spacegroup name | P 61 |
Unit cell lengths | 97.907, 97.907, 81.008 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.950 - 2.784 |
R-factor | 0.2036 |
Rwork | 0.200 |
R-free | 0.28150 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4o3n |
RMSD bond length | 0.010 |
RMSD bond angle | 1.140 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 58.573 | 2.837 |
High resolution limit [Å] | 2.784 | 2.784 |
Number of reflections | 10380 | 609 |
<I/σ(I)> | 7.3 | 1.31 |
Completeness [%] | 94.0 | |
Redundancy | 13.14 | |
CC(1/2) | 0.994 | 0.483 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 100 mM MES, pH 6.5, 20% PEG2000 MME, 5 mM calcium chloride |