8G1W
Crystal Structure Matriptase (C731S) in Complex with Inhibitor VD4162B
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 19-ID |
Synchrotron site | NSLS-II |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 75.259, 80.248, 40.361 |
Unit cell angles | 90.00, 95.45, 90.00 |
Refinement procedure
Resolution | 31.370 - 1.200 |
R-factor | 0.1493 |
Rwork | 0.148 |
R-free | 0.16580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ncl |
RMSD bond length | 0.007 |
RMSD bond angle | 1.164 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19_4084) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.180 | 1.220 |
High resolution limit [Å] | 1.200 | 1.200 |
Rmerge | 0.032 | 0.457 |
Rmeas | 0.038 | 0.549 |
Rpim | 0.020 | 0.301 |
Total number of observations | 248305 | 12004 |
Number of reflections | 74030 | 3781 |
<I/σ(I)> | 10.3 | 1.5 |
Completeness [%] | 99.6 | |
Redundancy | 3.4 | 3.2 |
CC(1/2) | 0.999 | 0.895 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.5 | 291 | 2M sodium formate, 100 sodium acetate |