8F0M
Monobody 12D5 bound to KRAS(G12D)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-09-24 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 151.386, 44.733, 88.162 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.900 - 2.440 |
R-factor | 0.2031 |
Rwork | 0.201 |
R-free | 0.24500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDB entries 7L0G & 5VPZ |
RMSD bond length | 0.003 |
RMSD bond angle | 0.660 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.19.2_4158: 000)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.480 |
High resolution limit [Å] | 2.440 | 2.440 |
Rmerge | 0.091 | 0.308 |
Rmeas | 0.110 | 0.373 |
Rpim | 0.061 | 0.207 |
Number of reflections | 23370 | 1168 |
<I/σ(I)> | 12.4 | 5 |
Completeness [%] | 98.4 | 99.7 |
Redundancy | 3.3 | 3.2 |
CC(1/2) | 0.939 | 0.905 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.2 M sodium sulfate decahydrate, 20% w/v PEG3350, 0.05% w/v benzamidine hydrochloride |