8E66
ETV6 H396Y variant bound to DNA containing the sequence GGAA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2021-03-11 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 29.841, 94.685, 76.259 |
Unit cell angles | 90.00, 94.76, 90.00 |
Refinement procedure
Resolution | 25.920 - 2.350 |
R-factor | 0.2203 |
Rwork | 0.216 |
R-free | 0.25470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4mhg |
Data reduction software | XDS |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.390 |
High resolution limit [Å] | 2.350 | 6.370 | 2.350 |
Rmerge | 0.150 | 0.055 | 0.675 |
Rmeas | 0.163 | 0.059 | 0.743 |
Rpim | 0.061 | 0.022 | 0.304 |
Total number of observations | 115206 | ||
Number of reflections | 17254 | 899 | 810 |
<I/σ(I)> | 4.5 | ||
Completeness [%] | 98.0 | 98.6 | 93.4 |
Redundancy | 6.7 | 7.4 | 5.4 |
CC(1/2) | 0.992 | 0.727 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | Protein in 50 mM NaCl, 20 mM HEPES, pH 7.5 at ~300 uM incubated 1:1 with 50 mM Sodium cacodylate, 25 mM Ammonium acetate, 10 mM MgCl2, 20% PEG-8000, pH 6.0 |