8DW7
DNA glycosylase MutY variant N146S in complex with DNA containing the transition state analog 1N paired with d(8-oxo-G)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-06 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.11585 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 48.890, 137.210, 74.160 |
Unit cell angles | 90.00, 101.00, 90.00 |
Refinement procedure
Resolution | 72.800 - 1.960 |
R-factor | 0.2038 |
Rwork | 0.203 |
R-free | 0.23430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6u7t |
RMSD bond length | 0.020 |
RMSD bond angle | 1.463 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 72.800 | 2.010 |
High resolution limit [Å] | 1.960 | 1.960 |
Rmerge | 0.068 | |
Number of reflections | 128636 | 9334 |
<I/σ(I)> | 0.089 | |
Completeness [%] | 94.7 | |
Redundancy | 3.14 | |
CC(1/2) | 0.998 | 0.102 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293.13 | PEG 4000, calcium acetate, ethylene glycol, Tris.HCl, b-mercaptoethanol |