8DSZ
PPARg bound to partial agonist H3B-487
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2017-08-20 |
Detector | MAR scanner 300 mm plate |
Wavelength(s) | 0.9786 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 92.975, 60.953, 118.842 |
Unit cell angles | 90.00, 103.53, 90.00 |
Refinement procedure
Resolution | 50.000 - 2.500 |
R-factor | 0.211 |
Rwork | 0.208 |
R-free | 0.26870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2prg |
RMSD bond length | 0.012 |
RMSD bond angle | 1.538 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.590 |
High resolution limit [Å] | 2.500 | 5.380 | 2.500 |
Rmerge | 0.111 | 0.055 | 1.667 |
Rmeas | 0.135 | 0.068 | 2.073 |
Rpim | 0.076 | 0.038 | 1.214 |
Total number of observations | 66744 | ||
Number of reflections | 22314 | 2317 | 1988 |
<I/σ(I)> | 7.3 | ||
Completeness [%] | 98.3 | 98.1 | 88.6 |
Redundancy | 3 | 2.9 | 2.5 |
CC(1/2) | 0.995 | 0.294 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 296 | 2 + 2 uL drops containing protein + reservoir solution containing 0.9-1.2 M Na citrate and 100 mM Tris pH 8.0. Protein formulated in 20 mg mL-1 in 20 mM Tris, pH 8.0, 100 mM NaCl, and 1mM TCEP |