8DSZ
PPARg bound to partial agonist H3B-487
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 21-ID-D |
| Synchrotron site | APS |
| Beamline | 21-ID-D |
| Temperature [K] | 100 |
| Detector technology | IMAGE PLATE |
| Collection date | 2017-08-20 |
| Detector | MAR scanner 300 mm plate |
| Wavelength(s) | 0.9786 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 92.975, 60.953, 118.842 |
| Unit cell angles | 90.00, 103.53, 90.00 |
Refinement procedure
| Resolution | 50.000 - 2.500 |
| R-factor | 0.211 |
| Rwork | 0.208 |
| R-free | 0.26870 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 2prg |
| RMSD bond length | 0.012 |
| RMSD bond angle | 1.538 |
| Data reduction software | HKL-2000 |
| Data scaling software | SCALEPACK |
| Phasing software | MOLREP |
| Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.000 | 50.000 | 2.590 |
| High resolution limit [Å] | 2.500 | 5.380 | 2.500 |
| Rmerge | 0.111 | 0.055 | 1.667 |
| Rmeas | 0.135 | 0.068 | 2.073 |
| Rpim | 0.076 | 0.038 | 1.214 |
| Total number of observations | 66744 | ||
| Number of reflections | 22314 | 2317 | 1988 |
| <I/σ(I)> | 7.3 | ||
| Completeness [%] | 98.3 | 98.1 | 88.6 |
| Redundancy | 3 | 2.9 | 2.5 |
| CC(1/2) | 0.995 | 0.294 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 296 | 2 + 2 uL drops containing protein + reservoir solution containing 0.9-1.2 M Na citrate and 100 mM Tris pH 8.0. Protein formulated in 20 mg mL-1 in 20 mM Tris, pH 8.0, 100 mM NaCl, and 1mM TCEP |






