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8DSZ

PPARg bound to partial agonist H3B-487

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2017-08-20
DetectorMAR scanner 300 mm plate
Wavelength(s)0.9786
Spacegroup nameC 1 2 1
Unit cell lengths92.975, 60.953, 118.842
Unit cell angles90.00, 103.53, 90.00
Refinement procedure
Resolution50.000 - 2.500
R-factor0.211
Rwork0.208
R-free0.26870
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2prg
RMSD bond length0.012
RMSD bond angle1.538
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.590
High resolution limit [Å]2.5005.3802.500
Rmerge0.1110.0551.667
Rmeas0.1350.0682.073
Rpim0.0760.0381.214
Total number of observations66744
Number of reflections2231423171988
<I/σ(I)>7.3
Completeness [%]98.398.188.6
Redundancy32.92.5
CC(1/2)0.9950.294
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2962 + 2 uL drops containing protein + reservoir solution containing 0.9-1.2 M Na citrate and 100 mM Tris pH 8.0. Protein formulated in 20 mg mL-1 in 20 mM Tris, pH 8.0, 100 mM NaCl, and 1mM TCEP

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PDB entries from 2025-02-05

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