8DRR
Product structure of SARS-CoV-2 Mpro C145A mutant in complex with nsp4-nsp5 (C4) cut site sequence
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-30 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.033 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 67.255, 107.417, 138.072 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 60.460 - 2.000 |
R-factor | 0.2076 |
Rwork | 0.206 |
R-free | 0.23710 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7joy |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 84.780 | 84.780 | 2.050 |
High resolution limit [Å] | 2.000 | 9.380 | 2.000 |
Rmerge | 0.087 | 0.031 | 2.185 |
Total number of observations | 603902 | 5714 | 41345 |
Number of reflections | 68407 | 776 | 4576 |
<I/σ(I)> | 12.8 | 48.3 | 1 |
Completeness [%] | 100.0 | 99.6 | 100 |
Redundancy | 8.8 | 7.4 | 9 |
CC(1/2) | 0.999 | 0.999 | 0.438 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 8 | 293 | 0.1 M Tris, 20% PEG6000, 0.3 M sodium chloride |