8DR9
Crystal structure of human ALDH2 in complex with NAD+ and PEG MME 550
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-04-21 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.984 |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 119.961, 119.961, 135.287 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.920 - 1.500 |
R-factor | 0.1369 |
Rwork | 0.136 |
R-free | 0.15740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vle |
RMSD bond length | 0.011 |
RMSD bond angle | 1.741 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.920 | 1.590 |
High resolution limit [Å] | 1.500 | 1.500 |
Number of reflections | 155768 | 24827 |
<I/σ(I)> | 16.37 | |
Completeness [%] | 99.9 | 99.6 |
Redundancy | 13.5 | 13.7 |
CC(1/2) | 0.999 | 0.809 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.2 | 293 | protein conditions: 8 mg/ml recombinant ALDH2 in 20 mM Tris-HCl, pH 8.0, 50 mM NaCl, 1 mM DTT, supplemented with 2-4% v/v DMSO well conditions: 100 mM sodium citrate, pH 5.0-5.6, 22-26% w/v PEG MME 550 550 hanging drops were set with a 1.5:1 protein:well ratio |