8DCE
SARS-CoV-2 Receptor-Binding Domain SPEEDesign Immunogen 1 Bound to C144 scFv
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-24 |
Detector | DECTRIS EIGER2 S 16M |
Wavelength(s) | 1 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 81.630, 97.310, 141.180 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.780 - 2.000 |
R-factor | 0.1786 |
Rwork | 0.177 |
R-free | 0.20300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7bwj |
RMSD bond length | 0.002 |
RMSD bond angle | 0.530 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.780 | 2.050 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmeas | 0.125 | 0.845 |
Number of reflections | 38255 | 2688 |
<I/σ(I)> | 12.83 | |
Completeness [%] | 99.7 | |
Redundancy | 5.73 | |
CC(1/2) | 0.997 | 0.793 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289 | 0.04 M potassium dihydrogen phosphate, 16% PEG8000, 20% glycerol |