8D58
Crystal structure of human METTL1-WDR4 complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-10-06 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9791 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 79.495, 91.113, 122.830 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.710 - 2.470 |
R-factor | 0.2045 |
Rwork | 0.203 |
R-free | 0.22930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vdu |
RMSD bond length | 0.002 |
RMSD bond angle | 0.436 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.710 | 2.490 |
High resolution limit [Å] | 2.450 | 2.450 |
Rmerge | 0.242 | 3.760 |
Rpim | 0.072 | 1.350 |
Number of reflections | 32208 | 1586 |
<I/σ(I)> | 17.48 | 0.8 |
Completeness [%] | 99.9 | 100 |
Redundancy | 11.9 | 8.2 |
CC(1/2) | 0.998 | 0.319 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295.15 | 50 mM MES pH 6.0, 6 mM MgCl2, 10 % isopropanol, 30% D-(+)-Galactose, 10 mM L-Glutathione reduced, 10 mM L-Glutathione oxidized |