8D0M
Human CD38 ectodomain bound to a 78c-ADPR adduct
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 93 |
Detector technology | PIXEL |
Collection date | 2021-05-29 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97741 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 63.612, 129.018, 81.712 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.630 - 2.040 |
R-factor | 0.1965 |
Rwork | 0.194 |
R-free | 0.22420 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8d0j |
RMSD bond length | 0.007 |
RMSD bond angle | 0.851 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.780 | 2.100 |
High resolution limit [Å] | 2.040 | 2.040 |
Rmerge | 0.094 | 1.255 |
Rmeas | 0.101 | 1.355 |
Rpim | 0.038 | 0.509 |
Number of reflections | 21620 | 2112 |
<I/σ(I)> | 19.1 | 2.3 |
Completeness [%] | 99.3 | |
Redundancy | 13.2 | |
CC(1/2) | 0.999 | 0.667 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291.15 | 100 mM Bis-Tris pH 5.5, 100 mM Ammonium sulfate, and 15% polyethylene glycol 3350 |