8CBF
SARS-CoV-2 Delta-RBD complexed with Omi-42 and Beta-49 Fabs
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-05-19 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9762 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 177.002, 144.275, 49.665 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 72.140 - 2.330 |
R-factor | 0.2167 |
Rwork | 0.215 |
R-free | 0.25530 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.004 |
RMSD bond angle | 0.613 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 75.000 | 2.370 |
High resolution limit [Å] | 2.330 | 2.330 |
Rmerge | 0.300 | |
Rpim | 0.086 | |
Number of reflections | 55255 | 2547 |
<I/σ(I)> | 7.1 | 0.4 |
Completeness [%] | 99.8 | 93.3 |
Redundancy | 13 | 8.7 |
CC(1/2) | 0.998 | 0.332 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | containing 0.1 M sodium citrate tribasic dihydrate pH 5.5 and 22% (w/v) PEG 1000 |