8BPT
Crystal structure of the second bromodomain of BRD5 from Leishmania donovani
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-01 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 33.370, 75.356, 105.798 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 31.845 - 1.600 |
Rwork | 0.162 |
R-free | 0.21470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5tck |
RMSD bond length | 0.008 |
RMSD bond angle | 1.402 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 31.845 | 31.820 | 1.630 |
High resolution limit [Å] | 1.600 | 8.620 | 1.600 |
Rmerge | 0.047 | 0.029 | 0.568 |
Rmeas | 0.054 | 0.033 | 0.646 |
Rpim | 0.025 | 0.015 | 0.304 |
Number of reflections | 35399 | 273 | 1738 |
<I/σ(I)> | 19.4 | ||
Completeness [%] | 98.3 | ||
Redundancy | 8.1 | 6.8 | 8.4 |
CC(1/2) | 0.999 | 0.999 | 0.928 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291 | 0.1 M HEPES pH 7.5 and 1.4 M sodium citrate |