8BE5
Crystal structure of SOS1-KRasG12V-Nanobody22-Nanobody75
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-15 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.96858 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 124.080, 124.080, 408.815 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.910 - 3.130 |
R-factor | 0.2286 |
Rwork | 0.226 |
R-free | 0.27790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1bkd |
RMSD bond length | 0.011 |
RMSD bond angle | 1.381 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 3.320 |
High resolution limit [Å] | 3.130 | 3.130 |
Number of reflections | 28523 | 4364 |
<I/σ(I)> | 13.65 | |
Completeness [%] | 99.3 | |
Redundancy | 10.8 | |
CC(1/2) | 0.990 | 0.770 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 10% PEG 4000, 0.1 M sodium citrate, pH 5.5 and 0.2 M sodium acetate |