8BA5
Crystal structure of the DNMT3A ADD domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-06 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 57.800, 57.800, 138.560 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 22.000 - 1.450 |
R-factor | 0.1876 |
Rwork | 0.187 |
R-free | 0.21290 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3a1a |
RMSD bond length | 0.005 |
RMSD bond angle | 0.805 |
Data reduction software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.080 | 1.540 |
High resolution limit [Å] | 1.450 | 1.450 |
Number of reflections | 45978 | 7353 |
<I/σ(I)> | 17.62 | 1.24 |
Completeness [%] | 99.8 | 99.1 |
Redundancy | 20.7 | 20.86 |
CC(1/2) | 1.000 | 0.670 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 291.15 | 17 % PEG 8000, 0.2 M Magnesiumsulfat, 0.1 M TRIS-HCl pH 7.5 |