8ASY
SARS-CoV-2 Omicron BA.2.75 RBD in complex with ACE2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-08-05 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.97628 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 105.261, 105.261, 220.753 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 76.180 - 2.850 |
R-factor | 0.2195 |
Rwork | 0.217 |
R-free | 0.26470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7zf7 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.433 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 76.200 | 2.900 |
High resolution limit [Å] | 2.850 | 2.850 |
Rmerge | 0.443 | |
Rpim | 0.086 | |
Number of reflections | 29749 | 1411 |
<I/σ(I)> | 7.6 | 0.4 |
Completeness [%] | 99.8 | 96.9 |
Redundancy | 26.8 | |
CC(1/2) | 0.971 | 0.279 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1% (w/v) n-Octyl-b-D-glucoside, 0.1 M Sodium citrate tribasic dihydrate pH 5.5 and 22% (w/v) PEG 3350 |