8ALK
Structure of the Legionella phosphocholine hydrolase Lem3 in complex with its substrate Rab1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-04 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979124 |
Spacegroup name | P 61 |
Unit cell lengths | 119.332, 119.332, 79.058 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 103.340 - 2.150 |
R-factor | 0.1837 |
Rwork | 0.181 |
R-free | 0.22750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Lem3_apo 3nkv |
RMSD bond length | 0.003 |
RMSD bond angle | 0.519 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 103.340 | 2.210 |
High resolution limit [Å] | 2.150 | 2.150 |
Rmerge | 0.124 | 1.060 |
Number of reflections | 34977 | 2867 |
<I/σ(I)> | 9.7 | 2.3 |
Completeness [%] | 100.0 | 100 |
Redundancy | 13.6 | 12.8 |
CC(1/2) | 0.995 | 0.761 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 292 | MES 0.1M pH 5, PEG6000 5% |