8AF0
Crystal structure of human angiogenin and RNA duplex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-25 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.380, 66.660, 101.400 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.120 - 2.430 |
R-factor | 0.2083 |
Rwork | 0.205 |
R-free | 0.26810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5eop |
RMSD bond length | 0.010 |
RMSD bond angle | 1.442 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.120 | 2.530 |
High resolution limit [Å] | 2.430 | 2.430 |
Number of reflections | 24805 | 2830 |
<I/σ(I)> | 13.03 | 1.49 |
Completeness [%] | 99.8 | 99.8 |
Redundancy | 7.088 | |
CC(1/2) | 0.999 | 0.694 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277.15 | 200 mM NaCl, 20 % (w/v) PEG6000, 100 mM Hepes pH 7.0 |