8A49
Endoglycosidase S in complex with IgG1 Fc
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-05-28 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 96.529, 174.294, 193.059 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.780 - 3.450 |
Rwork | 0.253 |
R-free | 0.31120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6en3 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.604 |
Data reduction software | DIALS |
Data scaling software | DIALS |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.780 | 3.510 |
High resolution limit [Å] | 3.450 | 3.450 |
Rmerge | 0.144 | 1.951 |
Rmeas | 0.150 | 2.023 |
Rpim | 0.040 | 0.532 |
Number of reflections | 43678 | 2124 |
<I/σ(I)> | 11.2 | 0.6 |
Completeness [%] | 100.0 | 100 |
Redundancy | 13.7 | 14.3 |
CC(1/2) | 1.000 | 0.599 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 294.15 | 0.09 M halogens (0.3M Sodium fluoride; 0.3M Sodium bromide; 0.3M Sodium iodide), 0.1 M buffer system 2 (Sodium HEPES; MOPS (acid)), pH 7.5, 37.5 % v/v precipitant mix 4 (25% v/v MPD; 25% PEG 1000; 25% w/v PEG 3350) - condition B8 from Morpheus crystallisation screen (Molecular Dimensions) |