8A23
Crystal structure of SARS-CoV-2 nsp10/nsp16 methyltransferase in complex with TO383
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-09 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.541870 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 85.142, 85.142, 162.874 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.780 - 2.800 |
R-factor | 0.2341 |
Rwork | 0.233 |
R-free | 0.25580 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6yz1 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.461 |
Data reduction software | XDS (xdsgui2) |
Data scaling software | XDS (xdsgui2) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20_4459) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.780 | 2.900 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmerge | 0.448 | 3.698 |
Rmeas | 0.468 | 3.859 |
Rpim | 0.134 | 1.087 |
Number of reflections | 15396 | 1499 |
<I/σ(I)> | 6.07 | 0.55 |
Completeness [%] | 99.7 | 99.87 |
Redundancy | 12 | 12 |
CC(1/2) | 0.984 | 0.303 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.2 M ammonium sulfate, 0.1 M sodium acetate pH 5.5, 10 % w/v PEG 2000 MME |