7ZWR
Crystal structure of human BCL6 BTB domain in complex with compound 11
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-05-01 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.9660 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 67.265, 67.265, 164.474 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 20.430 - 1.470 |
R-factor | 0.172 |
Rwork | 0.171 |
R-free | 0.19000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3bim |
RMSD bond length | 0.010 |
RMSD bond angle | 0.980 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.25) |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.3) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.540 | 47.540 | 1.520 |
High resolution limit [Å] | 1.470 | 5.690 | 1.470 |
Rmerge | 0.105 | 0.048 | 3.615 |
Rmeas | 0.108 | 0.050 | 3.718 |
Rpim | 0.025 | 0.012 | 0.860 |
Total number of observations | 731044 | 13308 | 67217 |
Number of reflections | 38445 | 820 | 3666 |
<I/σ(I)> | 16.6 | 56.9 | 1 |
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 19 | 16.2 | 18.3 |
CC(1/2) | 0.999 | 0.998 | 0.424 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 291 | 2 microliter of the BCL6-BTB/WVIP complex at 4 mg/mL plus 1 microliter of a crystallisation solution consisting of 1 M K2HPO4, 0.7 M NaH2PO4, 75 mM sodium acetate buffer pH 4.5 and 2 % DMSO, against 350 microliter of crystallisation solution. |