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7ZWN

Crystal structure of human BCL6 BTB domain in complex with a WVIP peptide

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-X
Temperature [K]100
Detector technologyPIXEL
Collection date2015-04-27
DetectorDECTRIS PILATUS 300K
Wavelength(s)1.5419
Spacegroup nameP 61 2 2
Unit cell lengths66.453, 66.453, 151.203
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution17.110 - 2.050
R-factor0.175
Rwork0.173
R-free0.21300
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3bim
RMSD bond length0.010
RMSD bond angle1.020
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER
Refinement softwareBUSTER (2.10.3)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]45.79045.7902.110
High resolution limit [Å]2.0508.9402.050
Rmerge0.1750.0461.243
Rmeas0.1800.0481.305
Rpim0.0400.0100.390
Total number of observations254697391510475
Number of reflections13158219986
<I/σ(I)>12.8341.9
Completeness [%]100.099.199.9
Redundancy19.417.910.6
CC(1/2)0.9980.9990.666
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP72912 microliter of the BCL6-BTB/WVIP complex at 4 mg/mL plus 1 microliter of a crystallisation solution consisting of 1 M K2HPO4, 0.7 M NaH2PO4, 75 mM sodium acetate buffer pH 4.5 and 2 % DMSO, against 350 microliter of crystallisation solution.

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PDB entries from 2024-07-10

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