7Z97
Crystal structure of the F191M variant of Variovorax paradoxus indole monooxygenase (VpIndA1) in complex with 6-bromoindole
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-21 |
Detector | DECTRIS EIGER2 S 16M |
Wavelength(s) | 0.97933 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 95.863, 95.863, 111.522 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 83.020 - 1.460 |
R-factor | 0.172 |
Rwork | 0.170 |
R-free | 0.20760 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 7z4x |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 83.020 | 83.020 | 1.490 |
High resolution limit [Å] | 1.460 | 8.010 | 1.460 |
Rmerge | 0.048 | 0.044 | 1.679 |
Rmeas | 0.051 | 0.049 | 2.161 |
Rpim | 0.018 | 0.021 | 1.335 |
Total number of observations | 726615 | 3797 | 5517 |
Number of reflections | 99972 | 686 | 2835 |
<I/σ(I)> | 12.8 | 39.6 | 0.3 |
Completeness [%] | 97.6 | 96.9 | 56.1 |
Redundancy | 7.3 | 5.5 | 1.9 |
CC(1/2) | 0.999 | 0.995 | 0.415 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 293 | 100 mM Na-acetate pH 5, 1400 mM Na-malonate, 1 mM DTT, 3 mM FAD, 1 mM 6-bromoindole, cryo: 15 % (v/v) ethylene glycol |