7Z7C
Broadly neutralizing DARPin bnD.8 in complex with the HIV-1 envelope variable loop 3 peptide V3 (BF520)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-13 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 96.227, 40.602, 45.631 |
Unit cell angles | 90.00, 113.91, 90.00 |
Refinement procedure
Resolution | 41.720 - 1.220 |
R-factor | 0.1499 |
Rwork | 0.147 |
R-free | 0.19680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2qyj |
RMSD bond length | 0.013 |
RMSD bond angle | 1.740 |
Data reduction software | XDS (VERSION Jan 31, 2020) |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.720 | 1.270 |
High resolution limit [Å] | 1.220 | 1.220 |
Rmerge | 0.057 | |
Rmeas | 0.061 | |
Rpim | 0.024 | |
Number of reflections | 45596 | 4282 |
<I/σ(I)> | 13 | 1.5 |
Completeness [%] | 95.2 | 90 |
Redundancy | 6.8 | |
CC(1/2) | 0.999 | 0.848 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.4 | 293 | 20% w/v PEG3350 0.18M Triammonium citrate |