7Z54
Crystal structure of YTHDF2 with compound YLI_DC1_006
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-06-12 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1 |
Spacegroup name | P 65 |
Unit cell lengths | 80.580, 80.580, 113.380 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 40.290 - 1.820 |
R-factor | 0.1942 |
Rwork | 0.193 |
R-free | 0.22490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4rdn |
RMSD bond length | 0.007 |
RMSD bond angle | 0.849 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.290 | 1.930 |
High resolution limit [Å] | 1.820 | 1.820 |
Number of reflections | 37653 | 6032 |
<I/σ(I)> | 25.05 | |
Completeness [%] | 99.9 | |
Redundancy | 12.4 | |
CC(1/2) | 0.999 | 0.963 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277.15 | 2.05 M Ammonium sulfate, 0.1 M Sodium citrate tribasic pH 5.1 |