7Z4U
Crystal structure of YTHDF2 with compound YLI_DF_028
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-01-28 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1 |
Spacegroup name | P 65 |
Unit cell lengths | 80.830, 80.830, 113.390 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.060 - 1.830 |
R-factor | 0.2153 |
Rwork | 0.214 |
R-free | 0.23220 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4rdn |
RMSD bond length | 0.009 |
RMSD bond angle | 0.964 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.060 | 1.940 |
High resolution limit [Å] | 1.830 | 1.830 |
Number of reflections | 72603 | 11597 |
<I/σ(I)> | 16.49 | |
Completeness [%] | 99.8 | |
Redundancy | 6.35 | |
CC(1/2) | 0.999 | 0.703 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277.15 | 2 M Ammonium sulfate, 0.1 M Sodium citrate tribasic pH 5.1 |