Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7YVD

The crystal structure of the progerin C-terminal peptide and the Ig-like domain of lamin A/C

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPAL/PLS BEAMLINE 5C (4A)
Synchrotron sitePAL/PLS
Beamline5C (4A)
Temperature [K]100
Detector technologyPIXEL
Collection date2021-07-14
DetectorDECTRIS EIGER X 9M
Wavelength(s)0.97926
Spacegroup nameP 64 2 2
Unit cell lengths91.974, 91.974, 204.562
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution34.390 - 2.100
R-factor0.1659
Rwork0.164
R-free0.19540
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7crg
RMSD bond angle4.885
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwarePHENIX ((1.20.1_4487: ???))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.140
High resolution limit [Å]2.1005.7002.100
Rmerge0.0630.0320.213
Rmeas0.0640.0330.218
Rpim0.0110.0050.044
Number of reflections5665617491487
<I/σ(I)>16.9
Completeness [%]99.798.899.7
Redundancy28.735.122.5
CC(1/2)1.0000.993
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION6.52870.1 M BIS-TRIS pH 6.5, 25% (v/v) Polyethylene glycol 300

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon