7YVD
The crystal structure of the progerin C-terminal peptide and the Ig-like domain of lamin A/C
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-14 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.97926 |
Spacegroup name | P 64 2 2 |
Unit cell lengths | 91.974, 91.974, 204.562 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 34.390 - 2.100 |
R-factor | 0.1659 |
Rwork | 0.164 |
R-free | 0.19540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7crg |
RMSD bond angle | 4.885 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.140 |
High resolution limit [Å] | 2.100 | 5.700 | 2.100 |
Rmerge | 0.063 | 0.032 | 0.213 |
Rmeas | 0.064 | 0.033 | 0.218 |
Rpim | 0.011 | 0.005 | 0.044 |
Number of reflections | 56656 | 1749 | 1487 |
<I/σ(I)> | 16.9 | ||
Completeness [%] | 99.7 | 98.8 | 99.7 |
Redundancy | 28.7 | 35.1 | 22.5 |
CC(1/2) | 1.000 | 0.993 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 6.5 | 287 | 0.1 M BIS-TRIS pH 6.5, 25% (v/v) Polyethylene glycol 300 |