7YPZ
Zafirlukast in complex with CRM1-Ran-RanBP1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NFPSS BEAMLINE BL18U |
Synchrotron site | NFPSS |
Beamline | BL18U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-12-12 |
Detector | MARMOSAIC 325 mm CCD |
Wavelength(s) | 0.9792 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 105.782, 105.782, 304.905 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.010 - 2.150 |
R-factor | 0.18463 |
Rwork | 0.183 |
R-free | 0.21644 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7cnd |
RMSD bond length | 0.006 |
RMSD bond angle | 1.310 |
Data reduction software | HKL-2000 |
Data scaling software | Aimless (0.7.4) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 304.900 | 304.900 | 2.260 |
High resolution limit [Å] | 2.150 | 6.790 | 2.150 |
Rmerge | 0.101 | 0.050 | 1.393 |
Rmeas | 0.103 | 0.051 | 1.431 |
Rpim | 0.021 | 0.011 | 0.325 |
Total number of observations | 2341149 | 72757 | 242158 |
Number of reflections | 94712 | 3384 | 13045 |
<I/σ(I)> | 23.2 | 56 | 2.6 |
Completeness [%] | 99.2 | 99.9 | 95.3 |
Redundancy | 24.7 | 21.5 | 18.6 |
CC(1/2) | 0.999 | 0.999 | 0.797 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.12 M Monosaccharides (20 mM D-Glucose; 20 mM D-Mannose; 20 mM D-Galactose; 20 mM L-Fucose; 20 mM D-Xylose; 20 mM N-Acetyl-D-Glucosamine), 0.1 M buffer system 1 pH 6.5 (sodium HEPES and MOPS), and 50 % Precipitant Mix 2 (40% v/v Ethylene glycol; 20 % w/v PEG 8000) |